API Reference

This section contains a complete reference of the API of the different chamois modules.

• Object model (chamois.model)
  • Cluster Sequence
  • Protein
  • Domain
• ORF detection (chamois.orf)
  • ORF Finder
  • Warnings
• Domain annotation (chamois.domains)
  • Domain Annotator
• Compositions (chamois.compositions)
  • Compositions
• Ontology (chamois.ontology)
  • Ontology
  • Adjacency Matrix
• Predictor (chamois.predictor)
  • Predictor
  • Information-theoric metrics
• ClassyFire (chamois.classyfire)
  • Term
  • Classification
  • Query
  • Cache
  • Client
  • Utils