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CHAMOIS

  • User Guide
  • Examples
  • Figures
  • CLI Reference
  • API Reference
    • Preprint
  • GitHub
  • PyPI
  • User Guide
  • Examples
  • Figures
  • CLI Reference
  • API Reference
  • Preprint
  • GitHub
  • PyPI

Section Navigation

  • Basic functionalities
  • Explain a prediction
  • Examples

Examples#

This sections shows some examples on how to use CHAMOIS from the command line or programmatically with the API.

  • Basic functionalities
    • Running predictions
    • Visualizing results
    • Screening predictions
    • Searching a catalog
    • Interpreting a prediction
  • Explain a prediction
    • Loading data
    • Calling genes
    • Extracting features
    • Building compositional matrices
    • Infer chemical classes
    • Build gene contribution table
    • Render cluster

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