Catalog Search (chamois search)

usage: chamois search [-h] -i INPUT [-m MODEL] -c CATALOG [-o OUTPUT]
                      [-d DISTANCE_MATRIX] [--rank RANK] [--render]

Named Arguments

-m, --model

The path to an alternative model used for predicting classes.

Input

Mandatory input files required by the command.

-i, --input

The chemical classes predicted by CHAMOIS for BGCs.

-c, --catalog

The path to the compound class catalog to compare predictions to.

Output

Parameters for controlling command output.

-o, --output

The path where to write the catalog search results in TSV format.

-d, --distance-matrix

The path where to write the generated pairwise distance matrix.

--rank

The maximum search rank to record in the table output.

Default: 10

--render

Display best match for each query.

Default: False